IL_9BH5_060

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_060 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.182

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9BH5|1|A5|G|1448
9BH5|1|A5|U|1449
9BH5|1|A5|U|1450
9BH5|1|A5|G|1451
*
9BH5|1|A5|C|1485
9BH5|1|A5|U|1486
9BH5|1|A5|U|1487
9BH5|1|A5|C|1488

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

Large ribosomal subunit protein uL4

Chain Ce

Large ribosomal subunit protein eL32