IL_9BH5_061

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9BH5|1|A5|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_061 not in the Motif Atlas

Homologous match to IL_8C3A_063

Geometric discrepancy: 0.1577

The information below is about IL_8C3A_063

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

9BH5|1|A5|C|1452
9BH5|1|A5|G|1453
9BH5|1|A5|U|1454
9BH5|1|A5|U|1455
9BH5|1|A5|G|1456
9BH5|1|A5|A|1457
9BH5|1|A5|A|1458
9BH5|1|A5|G|1459
*
9BH5|1|A5|U|1480
9BH5|1|A5|G|1481
9BH5|1|A5|G|1482
9BH5|1|A5|A|1483
9BH5|1|A5|G|1484

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

Large ribosomal subunit protein uL4

Chain Ce

Large ribosomal subunit protein eL32