IL_9BH5_063

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAAC*GGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_063 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.3579

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9BH5|1|A5|U|1566
9BH5|1|A5|G|1567
9BH5|1|A5|A|1568
9BH5|1|A5|A|1569
9BH5|1|A5|C|1570
*
9BH5|1|A5|G|1578
9BH5|1|A5|G|1579
9BH5|1|A5|A|1580

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CP

Large ribosomal subunit protein uL22

Chain CR

Large ribosomal subunit protein eL19

Chain Cl

Large ribosomal subunit protein eL39