IL_9BH5_064
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9BH5|1|A5|A|1664, 9BH5|1|A5|A|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_064 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1044
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
9BH5|1|A5|C|1597
9BH5|1|A5|U|1598
9BH5|1|A5|A|1599
9BH5|1|A5|A|1600
9BH5|1|A5|G|1601
*
9BH5|1|A5|C|1661
9BH5|1|A5|G|1662
9BH5|1|A5|A|1663
9BH5|1|A5|A|1664
9BH5|1|A5|A|1665
9BH5|1|A5|G|1666
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- Large ribosomal subunit protein uL2
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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