IL_9BH5_065

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_065 not in the Motif Atlas

Homologous match to IL_8C3A_069

Geometric discrepancy: 0.4286

The information below is about IL_8C3A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9BH5|1|A5|G|1628
9BH5|1|A5|U|1629
9BH5|1|A5|G|1630
*
9BH5|1|A5|C|1651
9BH5|1|A5|C|1652
9BH5|1|A5|C|1653

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CG

Large ribosomal subunit protein eL8

Chain CX

Large ribosomal subunit protein uL23B