IL_9BH5_067

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAA,UUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_067 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1481

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9BH5|1|A5|A|1699
9BH5|1|A5|A|1700
9BH5|1|A5|A|1701
*
9BH5|1|A5|U|1913
9BH5|1|A5|U|1914
9BH5|1|A5|U|1915

Current chains

Chain A5

28S rRNA

Nearby chains

Chain Cg

Large ribosomal subunit protein eL34

Chain Ck

Large ribosomal subunit protein eL38