IL_9BH5_072

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAAG*CGAAAA

Length

11 nucleotides

Bulged bases

9BH5|1|A5|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_072 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0809

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9BH5|1|A5|U|1787
9BH5|1|A5|U|1788
9BH5|1|A5|A|1789
9BH5|1|A5|A|1790
9BH5|1|A5|G|1791
*
9BH5|1|A5|C|1840
9BH5|1|A5|G|1841
9BH5|1|A5|A|1842
9BH5|1|A5|A|1843
9BH5|1|A5|A|1844
9BH5|1|A5|A|1845

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain Cg

Large ribosomal subunit protein eL34

Chain Ck

Large ribosomal subunit protein eL38