IL_9BH5_075
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGGAAUU*AGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1809, 9BH5|1|A5|A|1822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_075 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1153
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|A5|U|1804
9BH5|1|A5|G|1805
9BH5|1|A5|G|1806
9BH5|1|A5|A|1807
9BH5|1|A5|A|1808
9BH5|1|A5|U|1809
9BH5|1|A5|U|1810
*
9BH5|1|A5|A|1820
9BH5|1|A5|G|1821
9BH5|1|A5|A|1822
9BH5|1|A5|G|1823
9BH5|1|A5|A|1824
9BH5|1|A5|U|1825
9BH5|1|A5|G|1826
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain AN
- Small ribosomal subunit protein uS15
- Chain CR
- Large ribosomal subunit protein eL19
- Chain CZ
- Large ribosomal subunit protein eL27
- Chain Cc
- Large ribosomal subunit protein eL30
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Cp
- Large ribosomal subunit protein eL43
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