IL_9BH5_080

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9BH5|1|A5|G|2438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_080 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0878

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|A|1994
9BH5|1|A5|G|1995
9BH5|1|A5|U|1996
9BH5|1|A5|C|1997
9BH5|1|A5|G|1998
9BH5|1|A5|G|1999
*
9BH5|1|A5|C|2436
9BH5|1|A5|U|2437
9BH5|1|A5|G|2438
9BH5|1|A5|U|2439

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CV

Large ribosomal subunit protein uL14