IL_9BH5_085

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAUGG*CGUUGACU

Length

14 nucleotides

Bulged bases

9BH5|1|A5|U|2263, 9BH5|1|A5|U|2278, 9BH5|1|A5|C|2282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_085 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1464

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9BH5|1|A5|A|2260
9BH5|1|A5|G|2261
9BH5|1|A5|A|2262
9BH5|1|A5|U|2263
9BH5|1|A5|G|2264
9BH5|1|A5|G|2265
*
9BH5|1|A5|C|2276
9BH5|1|A5|G|2277
9BH5|1|A5|U|2278
9BH5|1|A5|U|2279
9BH5|1|A5|G|2280
9BH5|1|A5|A|2281
9BH5|1|A5|C|2282
9BH5|1|A5|U|2283

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

Large ribosomal subunit protein uL2

Chain Cp

Large ribosomal subunit protein eL43