IL_9BH5_092

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9BH5|1|A5|A|2384, 9BH5|1|A5|C|2390, 9BH5|1|A5|C|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_092 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1325

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9BH5|1|A5|C|2380
9BH5|1|A5|C|2381
9BH5|1|A5|A|2382
9BH5|1|A5|A|2383
9BH5|1|A5|A|2384
9BH5|1|A5|U|2385
9BH5|1|A5|G|2386
9BH5|1|A5|C|2387
9BH5|1|A5|C|2388
9BH5|1|A5|U|2389
9BH5|1|A5|C|2390
9BH5|1|A5|G|2391
*
9BH5|1|A5|C|2407
9BH5|1|A5|G|2408
9BH5|1|A5|C|2409
9BH5|1|A5|G|2410

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

eL41

Chain DB

Transfer RNA; tRNA