IL_9BH5_094

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_094 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1583

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9BH5|1|A5|A|2491
9BH5|1|A5|U|2492
9BH5|1|A5|A|2493
*
9BH5|1|A5|U|3101
9BH5|1|A5|G|3102
9BH5|1|A5|U|3103

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CB

Large ribosomal subunit protein uL3

Chain CO

Large ribosomal subunit protein uL13

Chain CP

Large ribosomal subunit protein uL22