IL_9BH5_116

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9BH5|1|A5|G|3057, 9BH5|1|A5|A|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_116 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0941

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BH5|1|A5|C|2991
9BH5|1|A5|U|2992
9BH5|1|A5|C|2993
*
9BH5|1|A5|G|3055
9BH5|1|A5|U|3056
9BH5|1|A5|G|3057
9BH5|1|A5|A|3058
9BH5|1|A5|G|3059

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CV

Large ribosomal subunit protein uL14