IL_9BH5_123

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAA*UGUCAAGG

Length

12 nucleotides

Bulged bases

9BH5|1|A5|A|3257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_123 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.4269

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9BH5|1|A5|C|3117
9BH5|1|A5|G|3118
9BH5|1|A5|A|3119
9BH5|1|A5|A|3120
*
9BH5|1|A5|U|3252
9BH5|1|A5|G|3253
9BH5|1|A5|U|3254
9BH5|1|A5|C|3255
9BH5|1|A5|A|3256
9BH5|1|A5|A|3257
9BH5|1|A5|G|3258
9BH5|1|A5|G|3259

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CO

Large ribosomal subunit protein uL13