IL_9BH5_129

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9BH5|1|A5|A|3243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_129 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2269

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BH5|1|A5|G|3215
9BH5|1|A5|A|3216
9BH5|1|A5|U|3217
9BH5|1|A5|U|3218
9BH5|1|A5|A|3219
9BH5|1|A5|U|3220
*
9BH5|1|A5|A|3240
9BH5|1|A5|G|3241
9BH5|1|A5|A|3242
9BH5|1|A5|A|3243
9BH5|1|A5|U|3244
9BH5|1|A5|C|3245

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CH

Large ribosomal subunit protein uL6

Chain CO

Large ribosomal subunit protein uL13

Chain Cm

Ubiquitin-ribosomal protein eL40 fusion protein