IL_9BH5_135

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_135 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1385

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9BH5|1|A5|G|3346
9BH5|1|A5|U|3347
9BH5|1|A5|A|3348
*
9BH5|1|A5|U|3357
9BH5|1|A5|G|3358
9BH5|1|A5|C|3359

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CM

Large ribosomal subunit protein eL14

Chain CO

Large ribosomal subunit protein uL13