IL_9BH5_136

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_136 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1917

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BH5|1|A5|C|3411
9BH5|1|A5|U|3412
9BH5|1|A5|U|3413
9BH5|1|A5|G|3414
*
9BH5|1|A5|C|3422
9BH5|1|A5|U|3423
9BH5|1|A5|U|3424
9BH5|1|A5|G|3425

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CP

Large ribosomal subunit protein uL22

Chain Cd

Large ribosomal subunit protein eL31