IL_9BH5_141

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_141 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1885

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9BH5|1|A5|A|3454
9BH5|1|A5|G|3455
9BH5|1|A5|A|3456
9BH5|1|A5|G|3457
*
9BH5|1|A5|C|3474
9BH5|1|A5|G|3475
9BH5|1|A5|A|3476
9BH5|1|A5|U|3477

Current chains

Chain A5

28S rRNA

Nearby chains

Chain AI

Small ribosomal subunit protein eS8

Chain CR

Large ribosomal subunit protein eL19

Chain CU

Large ribosomal subunit protein eL22