IL_9BH5_145
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUCCC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_145 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1029
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9BH5|1|A7|A|32
9BH5|1|A7|U|33
9BH5|1|A7|C|34
9BH5|1|A7|C|35
9BH5|1|A7|C|36
*
9BH5|1|A7|G|41
9BH5|1|A7|A|42
9BH5|1|A7|U|43
9BH5|1|A7|C|44
9BH5|1|A7|U|45
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CJ
- Large ribosomal subunit protein uL5B
Coloring options: