IL_9BH5_146
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUUAGUAC*GGAAUCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_146 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2939
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9BH5|1|A7|G|71
9BH5|1|A7|U|72
9BH5|1|A7|U|73
9BH5|1|A7|A|74
9BH5|1|A7|G|75
9BH5|1|A7|U|76
9BH5|1|A7|A|77
9BH5|1|A7|C|78
*
9BH5|1|A7|G|98
9BH5|1|A7|G|99
9BH5|1|A7|A|100
9BH5|1|A7|A|101
9BH5|1|A7|U|102
9BH5|1|A7|C|103
9BH5|1|A7|C|104
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CF
- Large ribosomal subunit protein uL30
- Chain CI
- Large ribosomal subunit protein uL16
- Chain CS
- Large ribosomal subunit protein eL20
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