IL_9BH5_152

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAAA*UGACU

Length

9 nucleotides

Bulged bases

9BH5|1|B2|A|446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_152 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3196

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9BH5|1|B2|A|38
9BH5|1|B2|A|39
9BH5|1|B2|A|40
9BH5|1|B2|A|41
*
9BH5|1|B2|U|444
9BH5|1|B2|G|445
9BH5|1|B2|A|446
9BH5|1|B2|C|447
9BH5|1|B2|U|448

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AJ

Small ribosomal subunit protein uS4