IL_9BH5_156

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAU*AAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_156 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3343

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9BH5|1|B2|U|108
9BH5|1|B2|U|109
9BH5|1|B2|A|110
9BH5|1|B2|U|111
*
9BH5|1|B2|A|278
9BH5|1|B2|A|279
9BH5|1|B2|A|280

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AI

Small ribosomal subunit protein eS8