IL_9BH5_169

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_169 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1378

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

9BH5|1|B2|G|492
9BH5|1|B2|U|493
9BH5|1|B2|U|494
9BH5|1|B2|G|495
*
9BH5|1|B2|C|509
9BH5|1|B2|U|510
9BH5|1|B2|U|511
9BH5|1|B2|C|512

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS4

Chain AY

Small ribosomal subunit protein eS24