IL_9BH5_171

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9BH5|1|B2|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_171 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.1575

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

9BH5|1|B2|G|533
9BH5|1|B2|U|534
9BH5|1|B2|C|535
*
9BH5|1|B2|G|562
9BH5|1|B2|C|563

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS3

Chain Ae

Ubiquitin-like domain-containing protein