IL_9BH5_175
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_175 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0721
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9BH5|1|B2|C|603
9BH5|1|B2|G|604
9BH5|1|B2|U|605
9BH5|1|B2|A|606
9BH5|1|B2|G|607
*
9BH5|1|B2|U|933
9BH5|1|B2|C|934
9BH5|1|B2|A|935
9BH5|1|B2|A|936
9BH5|1|B2|G|937
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AW
- Ribosomal Protein, Small subunit
- Chain AX
- Small ribosomal subunit protein uS12
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