IL_9BH5_177
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_177 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3815
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_24466.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
9BH5|1|B2|U|713
9BH5|1|B2|A|714
9BH5|1|B2|C|715
*
9BH5|1|B2|G|769
9BH5|1|B2|A|770
9BH5|1|B2|A|771
9BH5|1|B2|U|772
9BH5|1|B2|A|773
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AH
- Small ribosomal subunit protein eS7
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AW
- Ribosomal Protein, Small subunit
- Chain AX
- Small ribosomal subunit protein uS12
Coloring options: