IL_9BH5_184

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_184 not in the Motif Atlas

Homologous match to IL_8C3A_439

Geometric discrepancy: 0.0784

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9BH5|1|B2|G|850
9BH5|1|B2|U|851
9BH5|1|B2|A|852
9BH5|1|B2|U|853
*
9BH5|1|B2|A|889
9BH5|1|B2|G|890
9BH5|1|B2|A|891
9BH5|1|B2|C|892

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein eS1

Chain AO

Small ribosomal subunit protein uS11

Chain CA

Large ribosomal subunit protein uL2