IL_9BH5_199

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_199 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.1956

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

9BH5|1|B2|A|1193
9BH5|1|B2|C|1194
9BH5|1|B2|A|1195
*
9BH5|1|B2|U|1208
9BH5|1|B2|U|1209
9BH5|1|B2|U|1210

Current chains

Chain B2

18S rRNA

Nearby chains

Chain Ad

Small ribosomal subunit protein uS14

Chain Af

Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein