IL_9BH5_200

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9BH5|1|B2|U|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_200 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1039

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

9BH5|1|B2|G|1227
9BH5|1|B2|U|1228
9BH5|1|B2|G|1229
*
9BH5|1|B2|C|1396
9BH5|1|B2|C|1397

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AK

Plectin/S10 N-terminal domain-containing protein

Chain Ad

Small ribosomal subunit protein uS14