IL_9BH5_204

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_204 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.0897

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

9BH5|1|B2|U|1249
9BH5|1|B2|G|1250
9BH5|1|B2|G|1251
*
9BH5|1|B2|C|1282
9BH5|1|B2|G|1283
9BH5|1|B2|A|1284

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AC

Small ribosomal subunit protein uS5

Chain AD

Small ribosomal subunit protein uS3

Chain AR

Small ribosomal subunit protein eS17