IL_9BH5_205

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

9BH5|1|B2|A|1305, 9BH5|1|B2|U|1306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_205 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1554

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9BH5|1|B2|A|1304
9BH5|1|B2|A|1305
9BH5|1|B2|U|1306
9BH5|1|B2|A|1307
*
9BH5|1|B2|U|1335
9BH5|1|B2|U|1336
9BH5|1|B2|C|1337
9BH5|1|B2|U|1338

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AQ

Small ribosomal subunit protein uS9

Chain AU

Small ribosomal subunit protein uS10