IL_9BH5_208

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAU*AUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_208 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.3334

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9BH5|1|B2|C|1451
9BH5|1|B2|U|1452
9BH5|1|B2|A|1453
9BH5|1|B2|U|1454
*
9BH5|1|B2|A|1465
9BH5|1|B2|U|1466
9BH5|1|B2|C|1467
9BH5|1|B2|G|1468

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AT

Small ribosomal subunit protein eS19