IL_9BH5_213
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_213 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2074
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|B2|C|1600
9BH5|1|B2|G|1601
9BH5|1|B2|C|1602
9BH5|1|B2|U|1603
*
9BH5|1|B2|A|1707
9BH5|1|B2|A|1708
9BH5|1|B2|A|1709
9BH5|1|B2|A|1710
9BH5|1|B2|G|1711
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AP
- Small ribosomal subunit protein uS19
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Ae
- Ubiquitin-like domain-containing protein
- Chain Cn
- eL41
- Chain DB
- Transfer RNA; tRNA
- Chain DC
- mRNA
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