IL_9BH5_215

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUG*UG

Length

5 nucleotides

Bulged bases

9BH5|1|B2|U|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_215 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1861

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BH5|1|B2|C|1612
9BH5|1|B2|U|1613
9BH5|1|B2|G|1614
*
9BH5|1|B2|U|1697
9BH5|1|B2|G|1698

Current chains

Chain B2

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AX

Small ribosomal subunit protein uS12

Chain CV

Large ribosomal subunit protein uL14