IL_9BH5_218

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGGAC*GAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_218 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1442

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9BH5|1|B2|G|1634
9BH5|1|B2|G|1635
9BH5|1|B2|G|1636
9BH5|1|B2|A|1637
9BH5|1|B2|C|1638
*
9BH5|1|B2|G|1673
9BH5|1|B2|A|1674
9BH5|1|B2|A|1675
9BH5|1|B2|A|1676
9BH5|1|B2|C|1677

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein eS6

Chain AI

Small ribosomal subunit protein eS8

Chain CW

Large ribosomal subunit protein eL24