IL_9BH5_230
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUCAGCGG*CGUUGAAAU
- Length
- 17 nucleotides
- Bulged bases
- 9BH5|1|B2|U|1477, 9BH5|1|B2|G|1479
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_230 not in the Motif Atlas
- Homologous match to IL_8P9A_448
- Geometric discrepancy: 0.2726
- The information below is about IL_8P9A_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|B2|G|1436
9BH5|1|B2|U|1437
9BH5|1|B2|C|1438
9BH5|1|B2|A|1439
9BH5|1|B2|G|1440
9BH5|1|B2|C|1441
9BH5|1|B2|G|1442
9BH5|1|B2|G|1443
*
9BH5|1|B2|C|1475
9BH5|1|B2|G|1476
9BH5|1|B2|U|1477
9BH5|1|B2|U|1478
9BH5|1|B2|G|1479
9BH5|1|B2|A|1480
9BH5|1|B2|A|1481
9BH5|1|B2|A|1482
9BH5|1|B2|U|1483
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AD
- Small ribosomal subunit protein uS3
- Chain AF
- Small ribosomal subunit protein uS7
- Chain AQ
- Small ribosomal subunit protein uS9
- Chain AT
- Small ribosomal subunit protein eS19
- Chain AU
- Small ribosomal subunit protein uS10
- Chain Ad
- Small ribosomal subunit protein uS14
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