IL_9BKD_022

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9BKD|1|A|U|361, 9BKD|1|A|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_022 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.061

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9BKD|1|A|U|359
9BKD|1|A|A|360
9BKD|1|A|U|361
9BKD|1|A|C|362
9BKD|1|A|A|363
9BKD|1|A|A|364
*
9BKD|1|A|U|396
9BKD|1|A|G|397
9BKD|1|A|A|398
9BKD|1|A|C|399
9BKD|1|A|C|400
9BKD|1|A|A|401
9BKD|1|A|C|402
9BKD|1|A|G|403

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain E

Small ribosomal subunit protein uS12

Chain R

Small ribosomal subunit protein eS8