IL_9BKD_036
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9BKD|1|A|A|628, 9BKD|1|A|U|630, 9BKD|1|A|U|631
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_036 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.0932
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|G|611
9BKD|1|A|PSU|612
9BKD|1|A|G|613
9BKD|1|A|C|614
9BKD|1|A|C|615
9BKD|1|A|A|616
9BKD|1|A|G|617
*
9BKD|1|A|C|624
9BKD|1|A|G|625
9BKD|1|A|G|626
9BKD|1|A|U|627
9BKD|1|A|A|628
9BKD|1|A|A|629
9BKD|1|A|U|630
9BKD|1|A|U|631
9BKD|1|A|C|632
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS12
- Chain F
- Small ribosomal subunit protein eS30
- Chain U
- Programmed cell death protein 4
- Chain Z
- Small ribosomal subunit protein uS3
Coloring options: