IL_9BKD_049

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9BKD|1|A|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_049 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0766

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9BKD|1|A|C|931
9BKD|1|A|G|932
9BKD|1|A|G|933
9BKD|1|A|G|934
9BKD|1|A|G|935
*
9BKD|1|A|C|1007
9BKD|1|A|A|1008
9BKD|1|A|A|1009
9BKD|1|A|G|1010

Current chains

Chain A

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S13

Chain O

40S ribosomal protein S3a

Chain Q

40S ribosomal protein S26