IL_9BKD_071
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|U|1494, 9BKD|1|A|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_071 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1444
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|U|1333
9BKD|1|A|G|1334
9BKD|1|A|G|1335
*
9BKD|1|A|U|1492
9BKD|1|A|C|1493
9BKD|1|A|U|1494
9BKD|1|A|G|1495
9BKD|1|A|U|1496
9BKD|1|A|G|1497
9BKD|1|A|A|1498
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain U
- Programmed cell death protein 4
- Chain Z
- Small ribosomal subunit protein uS3
- Chain a
- Small ribosomal subunit protein eS10
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
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