IL_9BKD_100
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9BKD|1|A|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_100 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3007
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BKD|1|A|G|1281
9BKD|1|A|A|1282
9BKD|1|A|C|1283
9BKD|1|A|A|1284
9BKD|1|A|G|1285
9BKD|1|A|G|1286
9BKD|1|A|A|1287
9BKD|1|A|U|1288
9BKD|1|A|U|1289
9BKD|1|A|G|1290
*
9BKD|1|A|C|1309
9BKD|1|A|U|1310
9BKD|1|A|C|1311
9BKD|1|A|G|1312
9BKD|1|A|A|1313
9BKD|1|A|U|1314
9BKD|1|A|U|1315
9BKD|1|A|C|1316
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain a
- Small ribosomal subunit protein eS10
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin-40S ribosomal protein S27a
- Chain m
- 40S ribosomal protein S12
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