IL_9BLN_023
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9BLN|1|A|U|361, 9BLN|1|A|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_023 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0677
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BLN|1|A|U|359
9BLN|1|A|A|360
9BLN|1|A|U|361
9BLN|1|A|C|362
9BLN|1|A|A|363
9BLN|1|A|A|364
*
9BLN|1|A|U|396
9BLN|1|A|G|397
9BLN|1|A|A|398
9BLN|1|A|C|399
9BLN|1|A|C|400
9BLN|1|A|A|401
9BLN|1|A|C|402
9BLN|1|A|G|403
Current chains
- Chain A
- rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain R
- Small ribosomal subunit protein eS8
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