IL_9BLN_049
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_049 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.0991
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9BLN|1|A|G|928
9BLN|1|A|G|929
9BLN|1|A|C|930
9BLN|1|A|C|931
*
9BLN|1|A|G|1010
9BLN|1|A|A|1011
9BLN|1|A|A|1012
9BLN|1|A|U|1013
Current chains
- Chain A
- rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein eS27
- Chain I
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein eS1
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: