IL_9BLN_050
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 9BLN|1|A|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_050 not in the Motif Atlas
- Homologous match to IL_8C3A_438
- Geometric discrepancy: 0.0889
- The information below is about IL_8C3A_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
9BLN|1|A|C|931
9BLN|1|A|G|932
9BLN|1|A|G|933
9BLN|1|A|G|934
9BLN|1|A|G|935
*
9BLN|1|A|C|1007
9BLN|1|A|A|1008
9BLN|1|A|A|1009
9BLN|1|A|G|1010
Current chains
- Chain A
- rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein eS1
- Chain Q
- Small ribosomal subunit protein eS26
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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