IL_9BLN_051

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BLN_051 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0814

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BLN|1|A|G|942
9BLN|1|A|U|943
9BLN|1|A|A|944
9BLN|1|A|U|945
*
9BLN|1|A|A|981
9BLN|1|A|G|982
9BLN|1|A|A|983
9BLN|1|A|C|984

Current chains

Chain A

rRNA

Nearby chains

Chain O

Small ribosomal subunit protein eS1

Chain P

40S ribosomal protein S14