IL_9BLN_065
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_065 not in the Motif Atlas
- Homologous match to IL_8C3A_452
- Geometric discrepancy: 0.1338
- The information below is about IL_8C3A_452
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
9BLN|1|A|G|1270
9BLN|1|A|C|1271
9BLN|1|A|C|1272
*
9BLN|1|A|G|1510
9BLN|1|A|U|1511
9BLN|1|A|C|1512
Current chains
- Chain A
- rRNA
Nearby chains
- Chain a
- Small ribosomal subunit protein eS10
- Chain b
- Small ribosomal subunit protein uS19
- Chain i
- Small ribosomal subunit protein uS14
- Chain k
- Ubiquitin-40S ribosomal protein S27a
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