IL_9BLN_072
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9BLN|1|A|U|1494, 9BLN|1|A|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BLN_072 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1513
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BLN|1|A|U|1333
9BLN|1|A|G|1334
9BLN|1|A|G|1335
*
9BLN|1|A|U|1492
9BLN|1|A|C|1493
9BLN|1|A|U|1494
9BLN|1|A|G|1495
9BLN|1|A|U|1496
9BLN|1|A|G|1497
9BLN|1|A|A|1498
Current chains
- Chain A
- rRNA
Nearby chains
- Chain Z
- Small ribosomal subunit protein uS3
- Chain a
- Small ribosomal subunit protein eS10
- Chain h
- Small ribosomal subunit protein uS10
- Chain i
- Small ribosomal subunit protein uS14
- Chain p
- Programmed cell death protein 4
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