IL_9BS0_041

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_041 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3185

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|A|1243
9BS0|1|A|A|1244
9BS0|1|A|G|1245
9BS0|1|A|G|1246
9BS0|1|A|G|1247
*
9BS0|1|A|C|1279
9BS0|1|A|G|1280
9BS0|1|A|C|1281
9BS0|1|A|U|1282
9BS0|1|A|U|1283

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain I

Large ribosomal subunit protein uL15