IL_9BS0_042

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9BS0|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_042 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1769

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9BS0|1|A|C|1248
9BS0|1|A|U|1249
9BS0|1|A|G|1250
9BS0|1|A|U|1251
9BS0|1|A|G|1252
9BS0|1|A|A|1253
9BS0|1|A|A|1254
9BS0|1|A|G|1255
*
9BS0|1|A|U|1274
9BS0|1|A|G|1275
9BS0|1|A|G|1276
9BS0|1|A|A|1277
9BS0|1|A|G|1278

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein bL20