IL_9BS0_075

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUG*CCUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_075 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5235

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9BS0|1|A|G|2122
9BS0|1|A|A|2123
9BS0|1|A|A|2124
9BS0|1|A|U|2125
9BS0|1|A|G|2126
*
9BS0|1|A|C|2221
9BS0|1|A|C|2222
9BS0|1|A|U|2223
9BS0|1|A|U|2224
9BS0|1|A|C|2225

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2